YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP15_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.93
Transmembrane Helix	44	64	0.91
Non-Cytoplasmic	65	82	0.85
Transmembrane Helix	83	104	0.91
Cytoplasmic	105	121	0.83
Transmembrane Helix	122	140	0.94
Non-Cytoplasmic	141	147	0.78
Transmembrane Helix	148	169	0.84
Cytoplasmic	170	176	0.84
Transmembrane Helix	177	198	0.92
Non-Cytoplasmic	199	209	0.79
Transmembrane Helix	210	230	0.95
Cytoplasmic	231	251	0.87
Transmembrane Helix	252	276	0.90
Non-Cytoplasmic	277	309	0.83
Transmembrane Helix	310	344	0.79
Cytoplasmic	345	353	0.48
Transmembrane Helix	354	374	0.88
Non-Cytoplasmic	375	387	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHNQPMQSS NPQEHFVQIA LDIEHRLTTP ISLTSDSNQR RNQWVTIIIC TILAVTGQCI  60
   61 ARLLENYYFL HKNLSRRRGI LTQTLLQVVG FPILLLPFLL HFLIKKQKQL LIFSGETSLK 120
  121 HLAITYSILC IYMFCQAFFS DVRNQIPYRV FTLTYTTQLL FTLIFSKYYN DIKFNRWTFI 180
  181 SLILAVLAGA FTLYTFSAGS PIYGKKSYGY GIINVAFGAA IFFSLLLCII RKVFEELISF 240
  241 CNTSTNRKQP SFVVVLEMII FLSLVVTIIL VAAVLISGEH HDMKKEMETF TKGDIAYVRT 300
  301 MVGQAVAWQI YWVGIVGLVF AVSAVFSNVI SVCTWPIVSL LVAFLYNTHD HFDVFRGIAL 360
  361 GAAALSVSCY IYIIHKEKSD DDDQSTS