YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS14_ARATH
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIAMADFKL LLLILILLSL FELDLLHFHH DFFSPFPVKI GLLLISIFFY AYSTTRSKPV  60
   61 YLVDFSCHQP TDSCKISSET FFNMAKGAQL YTEETIQFMT RILNRSGLGD DTYSPRCMLT 120
  121 SPPTPSMYEA RHESELVIFG ALNSLFKKTG IEPREVGIFI VNCSLFNPNP SLSSMIVNRY 180
  181 KLKTDVKTYN LSGISVDLAT NLLKANPNTY AVIVSTENMT LSMYRGNDRS MLVPNCLFRV 240
  241 GGAAVMLSNR SQDRVRSKYE LTHIVRTHKG SSDKHYTCAE QKEDSKGIVG VALSKELTVV 300
  301 AGDTLKTNLT ALGPLVLPLS EKLRFILFLV KSKLFRLKVS PYVPDFKLCF KHFCIHAGGR 360
  361 ALLDAVEKGL GLSEFDLEPS RMTLHRFGNT SSSSLWYELA YVEAKCRVKR GDRVWQLAFG 420
  421 SGFKCNSIVW RALRTIPANE SLVGNPWGDS VHKYPVHVT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.60
Transmembrane Helix	8	28	0.66
Non-Cytoplasmic	29	459	0.58