YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AB2C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.90
Transmembrane Helix	36	56	0.90
Cytoplasmic	57	71	0.95
Transmembrane Helix	72	94	0.88
Non-Cytoplasmic	95	110	0.86
Transmembrane Helix	111	130	0.91
Cytoplasmic	131	140	0.82
Transmembrane Helix	141	163	0.89
Non-Cytoplasmic	164	171	0.87
Transmembrane Helix	172	194	0.85
Cytoplasmic	195	335	0.91
Transmembrane Helix	336	361	0.83
Non-Cytoplasmic	362	426	0.69
Transmembrane Helix	427	460	0.75
Cytoplasmic	461	522	0.96
Transmembrane Helix	523	546	0.89
Non-Cytoplasmic	547	555	0.71
Transmembrane Helix	556	578	0.76
Cytoplasmic	579	914	0.98
Transmembrane Helix	915	936	0.92
Non-Cytoplasmic	937	960	0.91
Transmembrane Helix	961	982	0.91
Cytoplasmic	983	1044	0.86
Transmembrane Helix	1045	1070	0.83
Non-Cytoplasmic	1071	1141	0.65
Transmembrane Helix	1142	1164	0.85
Cytoplasmic	1165	1174	0.59
Transmembrane Helix	1175	1197	0.79
Non-Cytoplasmic	1198	1623	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFEFIEWYC KPVPNGVWTK QVANAFGAYT PCATDSFVLG ISQLVLLVLC LYRIWLALKD  60
   61 HKVERFCLRS RLYNYFLALL AAYATAEPLF RLIMGISVLD FDGPGLPPFE AFGLGVKAFA 120
  121 WGAVMVMILM ETKIYIRELR WYVRFAVIYA LVGDMVLLNL VLSVKEYYSS YVLYLYTSEV 180
  181 GAQVLFGILL FMHLPNLDTY PGYMPVRSET VDDYEYEEIS DGQQICPEKH ANIFDKIFFS 240
  241 WMNPLMTLGS KRPLTEKDVW YLDTWDQTET LFTSFQHSWD KELQKPQPWL LRALNNSLGG 300
  301 RFWWGGFWKI GNDCSQFVGP LLLNQLLKSM QEDAPAWMGY IYAFSIFVGV VFGVLCEAQY 360
  361 FQNVMRVGYR LRSALIAAVF RKSLRLTNEG RRKFQTGKIT NLMTTDAESL QQICQSLHTM 420
  421 WSAPFRIIIA LILLYQQLGV ASLIGALLLV LMFPLQTVII SKMQKLTKEG LQRTDKRIGL 480
  481 MNEVLAAMDT VKCYAWENSF QSKVQTVRDD ELSWFRKSQL LGALNMFILN SIPVLVTIVS 540
  541 FGVFTLLGGD LTPARAFTSL SLFAVLRFPL FMLPNIITQV VNANVSLKRL EEVLATEERI 600
  601 LLPNPPIEPG EPAISIRNGY FSWDSKGDRP TLSNINLDVP LGSLVAVVGS TGEGKTSLIS 660
  661 AILGELPATS DAIVTLRGSV AYVPQVSWIF NATVRDNILF GSPFDREKYE RAIDVTSLKH 720
  721 DLELLPGGDL TEIGERGVNI SGGQKQRVSM ARAVYSNSDV YIFDDPLSAL DAHVGQQVFE 780
  781 KCIKRELGQK TRVLVTNQLH FLSQVDRIVL VHEGTVKEEG TYEELSSNGP LFQRLMENAG 840
  841 KVEEYSEENG EAEADQTAEQ PVANGNTNGL QMDGSDDKKS KEGNKKGGKS VLIKQEERET 900
  901 GVVSWRVLKR YQDALGGAWV VMMLLLCYVL TEVFRVTSST WLSEWTDAGT PKSHGPLFYN 960
  961 LIYALLSFGQ VLVTLTNSYW LIMSSLYAAK KLHDNMLHSI LRAPMSFFHT NPLGRIINRF1020
 1021 AKDLGDIDRT VAVFVNMFMG QVSQLLSTVV LIGIVSTLSL WAIMPLLVLF YGAYLYYQNT1080
 1081 AREVKRMDSI SRSPVYAQFG EALNGLSTIR AYKAYDRMAD INGRSMDNNI RFTLVNMGAN1140
 1141 RWLGIRLETL GGLMIWLTAS FAVMQNGRAE NQQAFASTMG LLLSYALNIT SLLTGVLRLA1200
 1201 SLAENSLNAV ERVGNYIEIP PEAPPVIENN RPPPGWPSSG SIKFEDVVLR YRPQLPPVLH1260
 1261 GVSFFIHPTD KVGIVGRTGA GKSSLLNALF RIVEVEKGRI LIDDCDVGKF GLMDLRKVLG1320
 1321 IIPQSPVLFS GTVRFNLDPF GEHNDADLWE SLERAHLKDT IRRNPLGLDA EVSEAGENFS1380
 1381 VGQRQLLSLS RALLRRSKIL VLDEATAAVD VRTDALIQKT IREEFKSCTM LIIAHRLNTI1440
 1441 IDCDKILVLD SGRVQEFSSP ENLLSNEGSS FSKMVQSTGA ANAEYLRSLV LDNKRAKDDS1500
 1501 HHLQGQRKWL ASSRWAAAAQ FALAASLTSS HNDLQSLEIE DDSSILKRTN DAVVTLRSVL1560
 1561 EGKHDKEIAE SLEEHNISRE GWLSSLYRMV EGLAVMSRLA RNRMQQPDYN FEGNTFDWDN1620
 1621 VEM