YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVPX_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.98
Transmembrane Helix	41	60	0.94
Non-Cytoplasmic	61	66	0.77
Transmembrane Helix	67	89	0.90
Cytoplasmic	90	119	0.96
Transmembrane Helix	120	139	0.91
Non-Cytoplasmic	140	157	0.86
Transmembrane Helix	158	182	0.91
Cytoplasmic	183	201	0.96
Transmembrane Helix	202	226	0.92
Non-Cytoplasmic	227	245	0.90
Transmembrane Helix	246	268	0.86
Cytoplasmic	269	347	0.83
Transmembrane Helix	348	370	0.76
Non-Cytoplasmic	371	391	0.43
Transmembrane Helix	392	413	0.89
Cytoplasmic	414	419	0.44
Transmembrane Helix	420	442	0.91
Non-Cytoplasmic	443	464	0.39
Transmembrane Helix	465	499	0.71
Cytoplasmic	500	509	0.55
Transmembrane Helix	510	532	0.88
Non-Cytoplasmic	533	575	0.61
Transmembrane Helix	576	594	0.80
Cytoplasmic	595	609	0.44
Transmembrane Helix	610	636	0.79
Non-Cytoplasmic	637	684	0.48
Transmembrane Helix	685	705	0.92
Cytoplasmic	706	711	0.44
Transmembrane Helix	712	735	0.86
Non-Cytoplasmic	736	779	0.48
Transmembrane Helix	780	801	0.59
Cytoplasmic	802	802	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMDEDVEQA TLVSYSDKPR TFPDMRSKTY SPLIIRILRN LNVRALSVLL LLSFGGIFYM  60
   61 GARTSPIIVF VFVVCIISFM LSVYLTKWVL AKDEGPPEMV QISDAIRDGA EGFLRTQYGT 120
  121 ISKMAFLLAF VILCIYLFRN LTPQQEASGL GRTMSAYITV AAFLLGALCS GIAGYVGMWV 180
  181 SVRANVRVSS AARRSAREAL QIAVRAGGFS ALVVVGMAVI GIAILYSTFY VWLDVDSPGS 240
  241 MKVTDLPLLL VGYGFGASFV ALFAQLGGGI YTKGADVGAD LVGKVEHGIP EDDPRNPAVI 300
  301 ADLVGDNVGD CAARGADLFE SIAAEIISAM ILGGTMAQKC KIEDPSGFIL FPLVVHSFDL 360
  361 VISSIGILSI KGTRNASVKS PVEDPMVVLQ KGYSLTIILA VLTFGASTRW LLYTEQAPSA 420
  421 WLNFFMCGLV GIITAYVFVW ISRYYTDYKY EPVRTLALAS STGHGTNIIA GVSLGLESTA 480
  481 LPVLVISVAI ISAFWLGNTS GLIDEKGNPT GGLFGTAVAT MGMLSTAAYV LTMDMFGPIA 540
  541 DNAGGIVEMS QQPESVREIT DVLDAVGNTT KATTKGFAIG SAALASFLLF SAYMDEVSAF 600
  601 ANVSFKEVDI AIPEVFIGGL LGAMLIFLFS AWACAAVGRT AQEVVNEVRR QFIERPGIMD 660
  661 YKEKPDYGRC VAIVASSALR EMIKPGALAI ISPIAVGFVF RILGYYTGQP LLGAKVVAAM 720
  721 LMFATVCGIL MALFLNTAGG AWDNAKKYIE TGALGGKGSD SHKAAVTGDT VGDPFKDTAG 780
  781 PSIHVLIKML ATITLVMAPI FL