YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P24D9_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLRSLNLCT ILLFLAISSQ VSQSLHFELQ SGRTKCISED IKSNSMTVGK YTVVNPNEAH  60
   61 PSPQSHKISI RVTSSYGNTY HHAEDVESGQ FAFTAVESGD YMACYTAVDH KPEVTLSIDF 120
  121 DWRTGVQSKS WSSVAKKSQV EVMEFDVKRL IETVNSIHEE MFYLREREEE MQNLNRATNS 180
  181 KMAWLSFLSL FVCLGVAGMQ FVHLKTFFEK KKVI

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	181	0.99
Transmembrane Helix	182	204	0.90
Cytoplasmic	205	214	0.93