YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDV1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEMEIEEIE AVLEKIWDLH DKLSDEIHLI SKSHFLKSVK PSNRSEKRKN PHGNSGEDKR  60
   61 PGYVFIKGFA VDDNDSTIQE AKSLNAIRTA LENLEDQLEF FHTIHTQQRT EKDVAIARLE 120
  121 QSRILLAMRL AEHHGKNYGV LEEALAFVGS IKSNSHYVSP DHLYDSSRNP DGANSIPDGI 180
  181 ESNFVINAFA STFGFAKRAL GFNHVKGVLG NAAIFAISVV AMLHLHQVAT SEHHLQKKED 240
  241 RFYRSQQRKT YGRDKSSADR SLDHLDVMMA RG

Type	Start	End	Confidence
Cytoplasmic	1	206	0.67
Transmembrane Helix	207	226	0.72
Non-Cytoplasmic	227	272	0.89