YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8885583, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTTNGTRD WAQIYAIYGI EQKHTLIFLI LNAIAFSILS TVFVIYFNPI CVFFQSFLFS  60
   61 NAAAARFSAG FFGAVTALSA VCLFFAAANF FYSAVPLRYE MAQRMVGSVG DWSSVKTALD 120
  121 LGCGRGILLN AVATQLKKTG SSGRVVGLDR SMTTTLSTLR TAHIEGVQEY VTCREGDVRR 180
  181 LPFSDNYFDV VVSAVFLHTI GKEYGQKTVE AAAERMRVLG EAVRVLKPGG VGVVWDLVHV 240
  241 PEYVRRLQEL RMEEIRVSKR VTAFMVKSHM VSFKKPSQHF VGSGEVRLDW RC

Type	Start	End	Confidence
Cytoplasmic	1	25	0.89
Transmembrane Helix	26	47	0.91
Non-Cytoplasmic	48	68	0.72
Transmembrane Helix	69	92	0.90
Cytoplasmic	93	292	0.88