YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL80_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLLFRLLV ESNTPSPAID NSTAALNSDL VVILAALLCA LICVLGLIAV SRCVWLRRLA  60
   61 AGNRTVSGSQ TQSPQPPVAA ANKGLKKKVL QSLPKLTFSP ESPESEKFAE CAICLAEFSA 120
  121 GDELRVLPQC GHGFHVACID TWLGSHSSCP SCRQILVVAR CHKCGGLPGS SSSGLESEPE 180
  181 IEIRIKQGED DPNSFLP

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.86
Transmembrane Helix	31	55	0.85
Cytoplasmic	56	197	0.89