YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6957732
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	119	0.49
Transmembrane Helix	120	142	0.81
Non-Cytoplasmic	143	149	0.45
Transmembrane Helix	150	172	0.88
Cytoplasmic	173	182	0.47
Transmembrane Helix	183	209	0.83
Non-Cytoplasmic	210	225	0.43
Transmembrane Helix	226	247	0.55
Cytoplasmic	248	251	0.71
Transmembrane Helix	252	272	0.82
Non-Cytoplasmic	273	289	0.84
Transmembrane Helix	290	309	0.94
Cytoplasmic	310	317	0.87
Transmembrane Helix	318	338	0.91
Non-Cytoplasmic	339	354	0.90
Transmembrane Helix	355	374	0.96
Cytoplasmic	375	383	0.76
Transmembrane Helix	384	403	0.91
Non-Cytoplasmic	404	408	0.80
Transmembrane Helix	409	427	0.84
Cytoplasmic	428	432	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWPWSAIAA SSSSSSSCFF ASPNSCLSIT RRTNLSCVNT SVKSLRHSRF DSKHNLVKRR  60
   61 INGDSVVRRS TTSNNSTEET ESSSSSSSVD CVGMGSDVEC VNNGEDEENR SSGILSGGEG 120
  121 TFLEWTVLIS PFFFWGTAMV AMKEVLPITG PFFVAAFRLI PAGLLLVAFA VYKGRPLPEG 180
  181 INAWFSIALF ALVDATCFQI LVCMLVMLVR IMVQGFLAQG LQRTSAGLGS VIIDSQPLTV 240
  241 AVLASFLFGE SIGIVRAGGL LLGVAGLLLL EVPSVTSDGN NFSLWGSGEW WMLLAAQSMA 300
  301 IGTVMVRWVS KYSDPIMATG WHMVIGGLPL LAISVINHDP VFNGSLQDLS TNDVIALLYT 360
  361 SIFGSAVSYG VYFYSATKGS LTKLSSLTFL TPMFASIFGY LYLNETFSSL QLVGAAVTLV 420
  421 AIYLVNFPEG ND