YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COPT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGMSGSSPA APAPSPSSFF QHRHRHGGMM HMTFFWGKTT EVLFDGWPGT SLKMYWVCLA  60
   61 VIFVISAFSE CLSRCGFMKS GPASLGGGLL QTAVYTVRAA LSYLVMLAVM SFNGGVFVAA 120
  121 MAGFGLGFMI FGSRAFRATS SNSHTEVQSH C

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.46
Transmembrane Helix	52	73	0.86
Cytoplasmic	74	82	0.60
Transmembrane Helix	83	107	0.65
Non-Cytoplasmic	108	108	0.50
Transmembrane Helix	109	132	0.83
Cytoplasmic	133	151	0.81