YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHTL6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.91
Transmembrane Helix	34	56	0.81
Non-Cytoplasmic	57	57	0.49
Transmembrane Helix	58	79	0.69
Cytoplasmic	80	173	0.73
Transmembrane Helix	174	195	0.85
Non-Cytoplasmic	196	221	0.71
Transmembrane Helix	222	240	0.72
Cytoplasmic	241	261	0.81
Transmembrane Helix	262	285	0.89
Non-Cytoplasmic	286	300	0.95
Transmembrane Helix	301	322	0.93
Cytoplasmic	323	342	0.87
Transmembrane Helix	343	364	0.89
Non-Cytoplasmic	365	372	0.67
Transmembrane Helix	373	394	0.94
Cytoplasmic	395	403	0.90
Transmembrane Helix	404	426	0.92
Non-Cytoplasmic	427	440	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSSPVSPS KETDRKSGEK WTAEDPSRPA KWWYSTFHTV TAMIGAGVLS LPYAMAYLGW  60
   61 GPGTFVLAMT WGLTLNTMWQ MVQLHECVPG TRFDRYIDLG RYAFGPKLGP WIVLPQQLIV 120
  121 QVGCNIVYMV TGGKCLKQFV EITCSTCTPV RQSYWILGFG GVHFILSQLP NFNSVAGVSL 180
  181 AAAVMSLCYS TIAWGGSIAH GRVPDVSYDY KATNPGDFTF RVFNALGQIS FAFAGHAVAL 240
  241 EIQATMPSTP ERPSKVPMWQ GVIGAYVVNA VCYFPVALIC YWAFGQDVDD NVLMNLQRPA 300
  301 WLIAAANLMV VVHVIGSYQV FAMPVFDLLE RMMVNKFGFK HGVVLRFFTR TIYVAFTLFI 360
  361 GVSFPFFGDL LGFFGGFGFA PTSFFLPSIM WLIIKKPRRF SVTWFVNWIS IIVGVFIMLA 420
  421 STIGGLRNII ADSSTYSFYA