YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P24B2_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKGTIVLL GLLWSFQATL GIRFVIDREE CFSHKAEYEG DTLHVSFVVI KSDSQWHFNE  60
   61 DGVDLVIHGP TGEQIHDFRE QISAKHDFVV QKKGVYRFCF TNKSPYHETI DFDVQLGHFA 120
  121 YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE 180
  181 SFALIGASFL QVYLLRRLFE RKLGMSRV

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	176	0.99
Transmembrane Helix	177	195	0.54
Cytoplasmic	196	208	0.51