YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATCA6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDANTKTILF FVVFFIDLFS PNILFVYARE IGNKPLFTYK QKTEKGPAEW GKLDPQWKVC  60
   61 STGKIQSPID LTDERVSLIH DQALSKHYKP ASAVIQSRGH DVMVSWKGDG GKITIHQTDY 120
  121 KLVQCHWHSP SEHTINGTSY DLELHMVHTS ASGKTTVVGV LYKLGEPDEF LTKILNGIKG 180
  181 VGKKEIDLGI VDPRDIRFET NNFYRYIGSL TIPPCTEGVI WTVQKRVLYF FCFCYRLIIF 240
  241 VTPYINIFWI FVFVFWCMLM

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.69
Transmembrane Helix	7	28	0.75
Cytoplasmic	29	231	0.78
Transmembrane Helix	232	256	0.85
Non-Cytoplasmic	257	260	0.65