YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15241114, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKMAKGWFP MSGTSSSGDQ QQQPLQTGGT SLLADWNSYA ASRDFEEDTG TLGFDIESAV  60
   61 RSANDTVSGT FNVVSKGVRD NLQSATSSMP SGKALMYFGL LLASGVFFIF IAFTMFLPVM 120
  121 VLMPQKFAIC FTLGCGFIIG SFFALRGPQN QLAHMSSAER LPLTLGFIAT MVGTIYVSMV 180
  181 LHSYILSVIF SALQVIALAY YCISYFPGGS SGMKFLSSTL TSSVFRMFGR

Type	Start	End	Confidence
Cytoplasmic	1	94	0.99
Transmembrane Helix	95	117	0.92
Non-Cytoplasmic	118	126	0.71
Transmembrane Helix	127	145	0.97
Cytoplasmic	146	160	0.89
Transmembrane Helix	161	186	0.82
Non-Cytoplasmic	187	191	0.60
Transmembrane Helix	192	216	0.72
Cytoplasmic	217	230	0.84