YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1B1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE  60
   61 SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL VLIGLLGGWM FLYLFRPSDQ 120
  121 PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL 180
  181 DEQEPANAGL LSFLGGSATS AAAAVSGRV

Type	Start	End	Confidence
Cytoplasmic	1	72	0.97
Transmembrane Helix	73	93	0.85
Non-Cytoplasmic	94	96	0.73
Transmembrane Helix	97	115	0.90
Cytoplasmic	116	134	0.83
Transmembrane Helix	135	168	0.83
Non-Cytoplasmic	169	185	0.68
Transmembrane Helix	186	207	0.84
Cytoplasmic	208	209	0.67