YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAX3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSIPMELMS IRNPNSTLLY RAHSRPPVKL CAPPRSLLPS RRHFSAPRAV VSYPGIRFGF  60
   61 TSPEVLLNRS VVAFAASHED SGESGVEVGK EKSDIDVEDD TSKEAWKQTL ESFKEQVSKM 120
  121 QSVSSEAYSV NSQKAMTVLK ETSEQLRIQA EKAKEELGTK AKVVSEEGRE YILKAAEESP 180
  181 SDVKEIVEAF ASTEDLKNVS RANDFHVGIP YGLLLLVGGF INFMVSGSIP AIRFGVILGG 240
  241 ALFALSLASL KSHRKGESST KFLKGQMAIV AIIFLRELRL LLSQKSTFLG FFTTLTSGGV 300
  301 LGFYLYKMVV KREKGPTLED GGEDESSDGF VRSEG

Type	Start	End	Confidence
Cytoplasmic	1	204	0.96
Transmembrane Helix	205	225	0.88
Non-Cytoplasmic	226	230	0.76
Transmembrane Helix	231	250	0.94
Cytoplasmic	251	261	0.85
Transmembrane Helix	262	280	0.88
Non-Cytoplasmic	281	286	0.79
Transmembrane Helix	287	306	0.93
Cytoplasmic	307	335	0.90