YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8052535
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN  60
   61 GKPVCESMNV VQYIDEVWSD KNPILPSDPY QRAQARFWVD FVDTKLFEPA DKIWQTKGEE 120
  121 QETAKKEYIE ALKILETELG DKPYFGGDTF GFVDIAMTGY YSWFEASEKL ANFSIEPECP 180
  181 TLMASAKRCL QRESVVQSLH DSEKILAFAY KIRKIYYEIR SNSLENSFPI TVVEECFAET 240
  241 LGFVLETQLL DIFYGVMMHD KETEHHEETL IVLQGYHALQ GHRVAHKLWN EGPKLLALAL 300
  301 QSRISEVVLA IIHSARIGEG ILLDHGTGMG VTLGGTGNET GDRQPKIGEG ALLGACLTIL 360
  361 GNISIGAHYR TKGAILFKAQ QYQNRSILSL LIFSFLIQVK TNRVFIHGFV KNYYNFFTRV 420
  421 FVSILKLYIL IFKKKISIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	349	0.82
Transmembrane Helix	350	369	0.67
Cytoplasmic	370	385	0.60
Transmembrane Helix	386	401	0.64
Non-Cytoplasmic	402	414	0.68
Transmembrane Helix	415	432	0.64
Cytoplasmic	433	439	0.67