YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7484960, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVIRTSRTM GLGQCMVYVV VLSAIAATVT SYPYTSPQTP HYNSPSHEHK IPKYTPHPKP  60
   61 SIYSSSPPPS YYSPSPKVDY KSPPPSYVYS SPPPPYYSPS PKVDYKSLPP PYVYSSPPPP 120
  121 YYSPSPKVNY KSPPPPYVYS SPPPPYYSPS PKGDYKSPPP PYVYSSPPPP YYSPSPKVDY 180
  181 KSPPPPYVYS SPPPPYYSPT PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS 240
  241 SPPPPYYSPS PKVNYKSPPP PYYRSPPPPY YSPSPKVDYK SPPPPYVYSS PPPPYYSPSP 300
  301 KVDYKSPPPP YVYSSPPPPY YSPTPKVDYK SPPPPYVYSS PPPPYYSPSP KVDYKSPPPP 360
  361 YVYSSPPPPY YSPSPKVDYK SPPPPYVYNS PPPPYYSPSP KVDYKSPPPP YIYNSPPPPY 420
  421 YSPSPKVNYK TPPPPYVYSS PPPPYYSPSP KVNYKSPPPP YVYSSPPPPY YSPSPNVDYK 480
  481 SPPPPYVYSS PPTPYYSPSS KVTYKSPPPP YVY

Type	Start	End	Confidence
Cytoplasmic	1	11	0.73
Transmembrane Helix	12	34	0.70
Non-Cytoplasmic	35	513	0.99