YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FK172_ARATH
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLFTATAP FLSLSKPFTK TASYHQCYAS SSNPPEPESS SPPPPPPPPQ PLASQQKRKK  60
   61 NVETTDWVAS SLTRRFGIGA GLAWAGFLAF GVISEQIKTR IEVSQEVANT RDVEEEKEIV 120
  121 LPNGIRYYDQ RVGGGATPRA GDLVVIDLKG QVQGTGQVFV DTFGTKDKKK MKPLALVVGS 180
  181 KPYSKGLCEG IDYVLRSMKA GGKRRVIVPP SLGFGVDGAE LESGLQIPPN ASLEYIVEID 240
  241 RVSIAPA

Type	Start	End	Confidence
Cytoplasmic	1	75	0.52
Transmembrane Helix	76	93	0.57
Non-Cytoplasmic	94	247	0.94