YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ELIP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASFNMQS VFAGGLTTRK INTNKLFSAG SFPNLKRNYP VGVRCMAEGG PTNEDSSPAP  60
   61 STSAAQPLPK SPSPPPPMKP KVSTKFSDLL AFSGPAPERI NGRLAMVGFV AALAVELSKG 120
  121 ENVLAQISDG GVSWFLGTTA ILTLASLVPL FKGISVESKS KGIMTSDAEL WNGRFAMLGL 180
  181 VALAFTEFVK GGTLV

Type	Start	End	Confidence
Cytoplasmic	1	99	0.92
Transmembrane Helix	100	118	0.83
Non-Cytoplasmic	119	131	0.81
Transmembrane Helix	132	154	0.88
Cytoplasmic	155	169	0.93
Transmembrane Helix	170	189	0.86
Non-Cytoplasmic	190	195	0.68