YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15229746, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKANRGGGEH GQHEALKLSS FFFMPERPRD YLVLFTRFSV LTCLIVSVSL VLRATFLSPS  60
   61 ARDYSTTYGL KLTAVPQKAI ALPPSASVGP TNISHIFFSI AGAAETWIDR SQYISLWWRN 120
  121 TTRGFVWLDE PVKIPENHSD VRFSIPTRVS DPGWTRFKFS SSRAAVRIAR IIWDSYRLNL 180
  181 PNVRWFVMGD DDTVFFTENL VKVLSKYDHE QMWYIGGNSE SVEQDVMHAY DMAFGGGGFA 240
  241 LSRPLAARLA AAMDDCLQRY FYFYGSDQRI ASCISEIGVP FTEERGFHQL DIRGDPYGFL 300
  301 AAHPLAPLVS LHHLVYLDPM FPNKNPIESL QTLMKPYTLD PNRILQQINC HDRKRQWSIS 360
  361 ISWGYTIQIY TYFLTATELT TPLQTFKTWR SSSDGPFVFN TRPLKPDPCE RPVTYFMDGA 420
  421 EDVRDSGTKT WYSIGDKNYG HCGKIEHTRL TKVKRILVTS MKTDPEYWNK APRRQCCEVM 480
  481 EGKVGKRKEK EMLLRIRKCR SLEKI

Type	Start	End	Confidence
Cytoplasmic	1	32	0.90
Transmembrane Helix	33	56	0.84
Non-Cytoplasmic	57	505	0.88