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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25405998, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGAGISVT DSDLVVLGHR VLHGVPENVL VTPASGNALI DGAFIGVTSD QTGSHRVFSL  60
   61 GKLEDLRFMC VFRFKLWWMT QRMGTNGKEI PCETQFLIVE ANQGSDLGGR DQSSSYVVFL 120
  121 PILEGDFRAV LQGNEANELE ICLESGDPTV DQFEGSHLVF VAAGSDPFDV ITKAVKYVMF 180
  181 LKSQLKTSLC PNFFRMPDML NWFGWCTWDA FYTNVTAKDV KQGLESNCDL TKPALILCSL 240
  241 KAGGVTPKFV IIDDGWQSVG MDETSVEFNA DNAANFANRL THIKENHKFQ KDGKEGHRVD 300
  301 DPSLSLGHVI TDIKSNNSLK YVYVWHAITG YWGGVKPGVS GMEHYESKVA YPVSSPGVMS 360
  361 SENCGCLESI TKNGLGLVNP EKVFSFYNDL HSYLASVGVD GVKVDVQNIL ETLGAGHGGR 420
  421 VKLAKKYHQA LEASISRNFP DNGIISCMSH NTDGLYSAKK TAVIRASDDF WPRDPASHTI 480
  481 HIASVAYNTL FLGEFMQPDW DMFHSLHPMA EYHAAARAVG GCAIYVSDKP GQHDFNLLRK 540
  541 LVLRDGSILR AKLPGRPTRE LVYLPKDTSL PVTLMPREYE VFTVVPVKEF SDGSKFAPVG 600
  601 LMEMFNSGGA IVSLRYDDEG TKFVVRMKLR GSGLVGVYSS VRRPRSVTVD SDDVEYRSVL 660
  661 ICWLICMGYR PDQYKSNRLV RVRFDIIIQK KNMGLVNDVE HKSLFRRDTD SPERKAASLM 720
  721 EQGSLSASFR ECSTKTPNNS VLQSFKIVIL SNKLNLLLPF GPLAILLHYL TDNKVSSCTF 780
  781 WVLFIAVSFL PVISQEMILL VAQGWIFLLS LVGITPLAER LGYATEQLAC YTGSTVGGLL 840
  841 NATFGNVTEL IISIFALKSG MIRVVQLTLL GSILSNMLLV LGCAFFCGGL VFSQKEQVFD 900
  901 KVGISSLGNA VVNSGLLLMA VMGLLFPAVL HYTHSEVHAG SSELALSRFS SCIMLVAYAA 960
  961 YLFFQLKSQP SSYTPLTEET NQNEETSDDD EDPEISKWEA IIWLSILTAW VSLLSGYLVD1020
 1021 AIEGASVSWK IPISFISVIL LPIVGNAAEH AGAIMFAMKD KLDLSLGVAI GSSIQISMFA1080
 1081 VPFCVVIGWM MGAQMDLNFQ LFETATLFIT VIVVAFFLQV NLEANYETNL EYISLFKVVK1140
 1141 CLCVWCFYAG RNIELLQRID AHSLLFDSRR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle