YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STP11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	42	0.90
Non-Cytoplasmic	43	83	0.94
Transmembrane Helix	84	106	0.83
Cytoplasmic	107	112	0.76
Transmembrane Helix	113	133	0.91
Non-Cytoplasmic	134	138	0.80
Transmembrane Helix	139	160	0.90
Cytoplasmic	161	169	0.89
Transmembrane Helix	170	192	0.88
Non-Cytoplasmic	193	202	0.82
Transmembrane Helix	203	224	0.92
Cytoplasmic	225	286	0.96
Transmembrane Helix	287	308	0.90
Non-Cytoplasmic	309	320	0.81
Transmembrane Helix	321	344	0.88
Cytoplasmic	345	351	0.91
Transmembrane Helix	352	373	0.91
Non-Cytoplasmic	374	389	0.85
Transmembrane Helix	390	412	0.90
Cytoplasmic	413	427	0.88
Transmembrane Helix	428	447	0.92
Non-Cytoplasmic	448	454	0.74
Transmembrane Helix	455	476	0.92
Cytoplasmic	477	514	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGAFIDES GHGGDYEGRV TAFVMITCIV AAMGGLLFGY DIGISGGVIS MEDFLTKFFP  60
   61 DVLRQMQNKR GRETEYCKYD NELLTLFTSS LYLAALFASF LASTITRLFG RKVSMVIGSL 120
  121 AFLSGALLNG LAINLEMLII GRLFLGVGVG FANQSVPLYL SEMAPAKIRG ALNIGFQLAI 180
  181 TIGILAANIV NYVTPKLQNG IGWRLSLGLA GVPAVMMLVG CFFLPDTPNS ILERGNKEKA 240
  241 KEMLQKIRGT MEVEHEFNEL CNACEAAKKV KHPWTNIMQA RYRPQLTFCT FIPFFQQLTG 300
  301 INVIMFYAPV LFKTIGFGND ASLISAVITG LVNVLSTIVS IYSVDKFGRR ALFLQGGFQM 360
  361 IVTQIAVGSM IGWKFGFNGE GNLSGVDADI ILALICLYVA GFAWSWGPLG WLVPSEICPL 420
  421 EIRSAGQSLN VSVNMFFTFF IGQFFLTMLC HMKFGLFYFF AGMVLIMTIF IYFLLPETKG 480
  481 VPIEEMGKVW KEHRYWGKYS NNDDGDDVDD DAYF