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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6714410
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.49
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIGDDDEL RSKTVSLPRR ISFTILLLLL LISLSTRVSG SLDKSGRRVI EARTGQDLIW  60
   61 VVQLSDLHFS VHHPERAIDF KNIVGPALAL INPSLVLITG DLTDGKSKDM LTMKLNEDEW 120
  121 LEYESVMQDV VKRSGLNKSI FYDLRGNHDN FGVPSVGSSV DFFSKYSING QMGRKGNVNT 180
  181 ITVETSERKH LFVGIDTTMH IGLRGPTNLF GHPTDELLSS LDSHLSQWDN QSAKPVAKIS 240
  241 FGHFPLSFTA LSHSQKSLKD VFLKHSISAY LCGHLHSRFG KNLKRHHHSG GISLSDNDLF 300
  301 QLNMRQSGAE STSNCSFGAL PAAEFWEWEM GDWRKNRAMR IMAIDRGHVS YVDLDFKSKP 360
  361 QKTIILPTFP LDSRFMSTSF ARHKYECQHM ISSSYDAIRA IVFSHSLVVE VVARVYDSSP 420
  421 GFDNLVMEAP MRKHGGDSSS SGATFFSLPW NYRAFEDPLP DRFWLQIEVT DIKGRLTLSE 480
  481 MRPFSINGLS SKVSWTWNEF RVMGCQWAAL YYPILWPALY SLFLVFLIPK CIIIVFKKQY 540
  541 TLKKFIAKKG PITLVLWILQ DLCRMPVVWF GYMAYLFYLI FFPWFSGEVF ADSGDRAYMT 600
  601 IMGWVVTSSG ADRKHEYIGQ PDVMVVVIPH VVFVVIPSVL VVCCLVAERE IYKDHIRTVS 660
  661 GKKEDDHDRG RKKRSQRRSL LFSNRRLFRK SVLLASLALY WKHFKNCWAL GRAYEMNVVH 720
  721 FPGYSLMTMD ADAMETETTD QVSASPLHFA RSYQVEALEK AIKQNTIVFL ETGSGKTLIA 780
  781 IMLLRSYAYL FRKPSPCFCV FLVPQVVLVT QQAEALKMHT DLKVVQVLVM TPAILLDALR 840
  841 HSFLSLSMIK VLIVDECHHA GGKHPYACIM RVYTCENESV LAGFVPFSTP SFKYYQHIKI 900
  901 PSPKRASLVE KLERLTIKHR LSLGTLDLNS STVDSVEKRL LRISSTLTYC LDDLGILLAQ 960
  961 KAAQSLSASQ NDSFLWGELN MFSVALVKKF CSDASQEFLA EIPQGLNWSV ANINGNAEAG1020
 1021 LLTLKTVCLI ETLLGYSSLE NIRCIIFVDR VITAIVLESL LAEILPNCNN WKTKYVAGNN1080
 1081 SGLQNQTRKK QNEIVEDFRR GLVNIIVATS ILEEGLDVQS CNLVIRFDPA SNICSFIQSR1140
 1141 GRARMQNSDY LMMVESGDLL TQSRLMKYLS GGKRMREESL DHSLVPCPPL PDDSDEPLFR1200
 1201 VESTGATVTL SSSVSLIYHY CSRLPSDEYF KPAPRFDVNK DQGSCTLYLP KSCPVKEVKA1260
 1261 EANNKVLKQA VCLKACIQLH KVGALSDHLV PDMVVAETVS QKLEKIQYNT EQPCYFPPEL1320
 1321 VSQFSAQPET TYHFYLIRMK PNSPRNFHLN DVLLGTRVVL EDDIGNTSFR LEDHRGTIAV1380
 1381 TLSYVGAFHL TQEEVLFCRR FQITLFRVLL DHSVENLMEA LNGLHLRDGV ALDYLLVPST1440
 1441 HSHETSLIDW EVIRSVNLTS HEVLEKHENC STNGASRILH TKDGLFCTCV VQNALVYTPH1500
 1501 NGYVYCTKGV LNNLNGNSLL TKRNSGDQTY IEYYEERHGI QLNFVDEPLL NGRHIFTLHS1560
 1561 YLHMAKKKKE KEHDREFVEL PPELCHVILS PISVDMIYSY TFIPSVMQRI ESLLIAYNLK1620
 1621 KSIPKVNIPT IKVLEAITTK KCEDQFHLES LETLGDSFLK YAVCQQLFQH CHTHHEGLLS1680
 1681 TKKDGMISNV MLCQFGCQQK LQGFIRDECF EPKGWMVPGQ SSAAYSLVND TLPESRNIYV1740
 1741 ASRRNLKRKS VADVVESLIG AYLSEGGELA ALMFMNWVGI KVDFTTTKIQ RDSPIQAEKL1800
 1801 VNVGYMESLL NYSFEDKSLL VEALTHGSYM MPEIPRCYQR LEFLGDSVLD YLITKHLYDK1860
 1861 YPCLSPGLLT DMRSASVNNE CYALVAVKAN LHKHILYASH HLHKHISRTV SEFEQSSLQS1920
 1921 TFGWESDISF PKVLGDVIES LAGAIFVDSG YNKEVVFASI KPLLGCMITP ETVKLHPVRE1980
 1981 LTELCQKWQF ELSKAKDFDS FTVEVKAKEM SFAHTAKASD KKMAKKLAYK EVLNLLKNSL2040
 2041 DY

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