YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX19_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.95
Transmembrane Helix	30	51	0.93
Cytoplasmic	52	60	0.84
Transmembrane Helix	61	79	0.90
Non-Cytoplasmic	80	96	0.80
Transmembrane Helix	97	117	0.88
Cytoplasmic	118	126	0.88
Transmembrane Helix	127	150	0.92
Non-Cytoplasmic	151	158	0.84
Transmembrane Helix	159	181	0.91
Cytoplasmic	182	194	0.89
Transmembrane Helix	195	216	0.89
Non-Cytoplasmic	217	223	0.82
Transmembrane Helix	224	248	0.87
Cytoplasmic	249	263	0.94
Transmembrane Helix	264	289	0.83
Non-Cytoplasmic	290	341	0.74
Transmembrane Helix	342	363	0.85
Cytoplasmic	364	405	0.49
Transmembrane Helix	406	429	0.90
Non-Cytoplasmic	430	800	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTNVTGQC PGPMKATSNG AFQNESPLDF ALPLIILQIV LVVVFTRLLA YFLKPLKQPR  60
   61 VIAEIIGGIL LGPSALGRSK AYLDTIFPKK SLTVLDTLAN IGLLFFLFLV GLELDFAAIK 120
  121 KTGKKSLLIA IAGISLPFIV GVGTSFVLSA TISKGVDQLP FIVFMGVALS ITAFPVLARI 180
  181 LAELKLLTTD IGRMAMSAAG VNDVAAWILL ALAIALSGDG TSPLVSVWVL LCGTGFVIFA 240
  241 VVAIKPLLAY MARRCPEGEP VKELYVCVTL TVVLAASFVT DTIGIHALFG AFVVGIVAPK 300
  301 EGPFCRILTE KIEDLVSGLL LPLYFAASGL KTDVTTIRGA QSWGLLVLVI LTTCFGKIVG 360
  361 TVGSSMLCKV PFREAVTLGF LMNTKGLVEL IVLNIGKDRK VLNDQAFAIL VLMALFTTFI 420
  421 TTPIVMLIYK PARKGAPYKH RTIQRKDHDS ELRILACFHS TRNIPTLINL IESSRGTGKK 480
  481 GRLCVYAMHL MELSERSSAI AMVHKARNNG LPIWNKIERS TDQMVIAFEA YQHLRAVAVR 540
  541 PMTAISGLSS IHEDICTSAH QKRVAMILLP FHKHQRMDGA MESIGHRFHE VNQRVLQRAP 600
  601 CSVGILVDRG LGGTSQVVAS EVAYKVVIPF FGGLDDREAL AYGMKMVEHP GITLTVYKFV 660
  661 AARGTLKRFE KSEHDEKEKK EKETDEEFVR ELMNDPRGNE SLAYEERVVE SKDDIIATLK 720
  721 SMSKCNLFVV GRNAAVASLV KSTDCPELGP VGRLLSSSEF STTASVLVVQ GYDPAADTRP 780
  781 LVEEDAEYDQ SSRDISDLTA