YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DER22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAVEEWYK QMPIITRSYL TAAVITTVGC SLDIISPYNL YLNPTLVVKQ YQYWRLVTNF  60
   61 LYFRKMDLDF MFHMFFLARY CKLLEENSFR GKTADFLYML LFGASVLTGI VLIGGMIPYL 120
  121 SASFAKIIFL SNSLTFMMVY VWSKQNPYIH MSFLGLFTFT AAYLPWVLLG FSILVGASAW 180
  181 VDLLGMIAGH AYYFLAEVYP RMTNRRPLKT PSFLKALFAD EPVVVARPED VRFAAAPFDE 240
  241 IHQD

Type	Start	End	Confidence
Cytoplasmic	1	17	0.89
Transmembrane Helix	18	37	0.80
Non-Cytoplasmic	38	60	0.76
Transmembrane Helix	61	81	0.64
Cytoplasmic	82	95	0.82
Transmembrane Helix	96	117	0.92
Non-Cytoplasmic	118	121	0.78
Transmembrane Helix	122	142	0.88
Cytoplasmic	143	148	0.81
Transmembrane Helix	149	169	0.87
Non-Cytoplasmic	170	175	0.58
Transmembrane Helix	176	196	0.86
Cytoplasmic	197	244	0.92