YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UTR3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESHGSGLRR VLLLSFCVAG IWAAYIYQGI LQETLSTKKF GEDGKRFEHL AFLNLAQNVI  60
   61 CLVWSYIMIK LWSNGGSGGA PWWTYWSAGI TNTIGPAMGI EALKYISYPA QVLAKSSKMI 120
  121 PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLAHPNA PLGYGLCFLN 180
  181 LAFDGFTNAT QDSITARYPK TNAWDIMLGM NLWGTIYNMV YMFGLPHGSG FEAVQFCKQH 240
  241 PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ 300
  301 WGCVSMVFGG LSYQIYLKWR KLQRMQKKKK A

Type	Start	End	Confidence
Cytoplasmic	1	7	0.63
Transmembrane Helix	8	31	0.83
Non-Cytoplasmic	32	49	0.62
Transmembrane Helix	50	72	0.79
Cytoplasmic	73	81	0.49
Transmembrane Helix	82	103	0.82
Non-Cytoplasmic	104	134	0.55
Transmembrane Helix	135	155	0.86
Cytoplasmic	156	169	0.68
Transmembrane Helix	170	186	0.68
Non-Cytoplasmic	187	205	0.65
Transmembrane Helix	206	231	0.70
Cytoplasmic	232	243	0.68
Transmembrane Helix	244	265	0.84
Non-Cytoplasmic	266	297	0.79
Transmembrane Helix	298	317	0.90
Cytoplasmic	318	331	0.92