YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACBP2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD  60
   61 SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE STELDEAFSA ATLFVTTAAA 120
  121 DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK 180
  181 YIEIVTQLYP TWLDGGVKAG SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF 240
  241 AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ 300
  301 TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Type	Start	End	Confidence
Cytoplasmic	1	9	0.41
Transmembrane Helix	10	29	0.57
Non-Cytoplasmic	30	354	0.86