YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SRC2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECRSLDLTI ISAEDLKDVQ LIGKQDLYAV VSINGDARTK QKTKVDKDCG TKPKWKHQMK  60
   61 LTVDDAAARD NRLTLVFEIV ADRPIAGDKP VGEVSVPVKE LLDQNKGDEE KTVTYAVRLP 120
  121 NGKAKGSLKF SFKFGEKYTY GSSSGPHAPV PSAMDHKTMD QPVTAYPPGH GAPSAYPAPP 180
  181 AGPSSGYPPQ GHDDKHDGVY GYPQQAGYPA GTGGYPPPGA YPQQGGYPGY PPQQQGGYPG 240
  241 YPPQGPYGYP QQGYPPQGPY GYPQQQAHGK PQKPKKHGKA GAGMGLGLGL GAGLLGGLLV 300
  301 GEAVSDIADM GDMGDMGDMG GFDF

Type	Start	End	Confidence
Cytoplasmic	1	281	0.87
Transmembrane Helix	282	304	0.81
Non-Cytoplasmic	305	324	0.93