YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX31_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.94
Transmembrane Helix	74	96	0.76
Non-Cytoplasmic	97	112	0.65
Transmembrane Helix	113	134	0.84
Cytoplasmic	135	152	0.79
Transmembrane Helix	153	174	0.91
Non-Cytoplasmic	175	180	0.72
Transmembrane Helix	181	203	0.88
Cytoplasmic	204	216	0.86
Transmembrane Helix	217	238	0.92
Non-Cytoplasmic	239	254	0.73
Transmembrane Helix	255	274	0.83
Cytoplasmic	275	288	0.78
Transmembrane Helix	289	311	0.86
Non-Cytoplasmic	312	325	0.75
Transmembrane Helix	326	350	0.86
Cytoplasmic	351	367	0.90
Transmembrane Helix	368	390	0.94
Non-Cytoplasmic	391	413	0.92
Transmembrane Helix	414	435	0.66
Cytoplasmic	436	441	0.51
Transmembrane Helix	442	463	0.87
Non-Cytoplasmic	464	469	0.64
Transmembrane Helix	470	492	0.90
Cytoplasmic	493	522	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDNDFKDP FLASTEEEEL DPATQKALME YLGVGSRASS LVSFSSTAVD IPPISGVGDF  60
   61 VREFRIESRK LWKLAGPAIF TTMSQYSLGA VTQVFAGHIS TLALAAVSIE NSVIAGFSFG 120
  121 IMLGMGSALE TLCGQAFGAG KVSMLGVYLQ RSWVILSVTA LFLSLIYIFA APILTFIGQT 180
  181 AAISAMAGIF SIYMIPQIFA YAINFPTAKF LQSQSKIMVM AGISGVVLVI HSFFTWLVMS 240
  241 RLHWGLPGLA LVLNTSWWVI VVAQLVYIFN CTCGEAWSGF TWEAFHNLWG FVKLSLASAA 300
  301 MLCLEIWYFM ALVLFAGYLK NAEVSVAALS ICMNILGWAA MVAFGTNAAV SVRVSNELGA 360
  361 SHPRTAKFSL VVAVILSTAI GMFIAAGLLF FRNEYPVLFV EDEEVRNVVR ELTPMLAFCI 420
  421 VINNVQPVLS GVAVGAGWQA VVAYVNIACY YLFGVPFGLL LGFKLEYGVM GIWWGMVTGT 480
  481 FVQSIVLTWM ICKTNWEKEA SMAEERIKEW GGVPAEKETL LN