YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CLV2_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKIADFTLF FFIFVFSPSL PLAQSQLPDL DPQDKASLLI FRVSIHDLNR SLSTWYGSSC  60
   61 SNWTGLACQN PTGKVLSLTL SGLNLSSQIH PSLCKLSSLQ SLDLSHNNFS GNIPSCFGSL 120
  121 RNLRTLNLSR NRFVGSIPAT FVSLKELREV VLSENRDLGG VVPHWFGNFS MNLERVDFSF 180
  181 CSFVGELPES LLYLKSLKYL NLESNNMTGT LRDFQQPLVV LNLASNQFSG TLPCFYASRP 240
  241 SLSILNIAEN SLVGGLPSCL GSLKELSHLN LSFNGFNYEI SPRLMFSEKL VMLDLSHNGF 300
  301 SGRLPSRISE TTEKLGLVLL DLSHNSFSGD IPLRITELKS LQALRLSHNL LTGDIPARIG 360
  361 NLTYLQVIDL SHNALTGSIP LNIVGCFQLL ALMISNNNLS GEIQPELDAL DSLKILDISN 420
  421 NHISGEIPLT LAGLKSLEIV DISSNNLSGN LNEAITKWSN LKYLSLARNK FSGTLPSWLF 480
  481 KFDKIQMIDY SSNRFSWFIP DDNLNSTRFK DFQTGGGEGF AEPPGKVEIK ISAAVVAKDE 540
  541 LSFSYNLLSM VGIDLSDNLL HGEIPEALFR QKNIEYLNLS YNFLEGQLPR LEKLPRLKAL 600
  601 DLSHNSLSGQ VIGNISAPPG LTLLNLSHNC FSGIITEKEG LGKFPGALAG NPELCVETPG 660
  661 SKCDPANIDA SQEEIYQNEL VEGPISIWIF CLSAFISFDF GVLGIFCSAR ARSYILQTKA 720
  721 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle