YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELKSFVK VWGSAIISVS YCYYIPSKIK SGVHRLLSVL PVCVLFLVLP LFFVFTIFSS  60
   61 TTAFCLSILA NFKLILFAFD KGPLLPLPAN LFRFICFTCL PIKIQKNPNS QNHLPKWVFF 120
  121 CKAAIFGVLL NVHNYKSSLP PILLICLYPL HLYLVLDVLL TIVNALLTII LGCDLEPHFN 180
  181 EPYLATSLQD FWGRRWNLMV PAIFRPGVYH PMRSVCQPQM RSDWARFMGC WTTFFVSGLI 240
  241 HELVYFYINR ETPTWEVTWF FVLQGVCTAM EKAVKRKTRW SLSPMLSRLI TVGFLVVTGY 300
  301 FLFFRQIERS NMLERRATEA SLIIDFVKHK LSNFLL

Type	Start	End	Confidence
Cytoplasmic	1	35	0.55
Transmembrane Helix	36	70	0.74
Non-Cytoplasmic	71	83	0.49
Transmembrane Helix	84	102	0.57
Cytoplasmic	103	113	0.63
Transmembrane Helix	114	135	0.73
Non-Cytoplasmic	136	149	0.53
Transmembrane Helix	150	172	0.82
Cytoplasmic	173	226	0.72
Transmembrane Helix	227	248	0.86
Non-Cytoplasmic	249	254	0.79
Transmembrane Helix	255	274	0.67
Cytoplasmic	275	284	0.73
Transmembrane Helix	285	304	0.94
Non-Cytoplasmic	305	336	0.80