YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DIT22_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.44
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.44
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	78	0.85
Transmembrane Helix	79	99	0.92
Cytoplasmic	100	111	0.86
Transmembrane Helix	112	136	0.87
Non-Cytoplasmic	137	151	0.82
Transmembrane Helix	152	175	0.85
Cytoplasmic	176	195	0.79
Transmembrane Helix	196	213	0.87
Non-Cytoplasmic	214	291	0.51
Transmembrane Helix	292	314	0.85
Cytoplasmic	315	345	0.66
Transmembrane Helix	346	362	0.65
Non-Cytoplasmic	363	363	0.42
Transmembrane Helix	364	388	0.78
Cytoplasmic	389	400	0.55
Transmembrane Helix	401	423	0.89
Non-Cytoplasmic	424	434	0.57
Transmembrane Helix	435	457	0.89
Cytoplasmic	458	465	0.57
Transmembrane Helix	466	490	0.84
Non-Cytoplasmic	491	496	0.52
Transmembrane Helix	497	515	0.65
Cytoplasmic	516	522	0.54
Transmembrane Helix	523	545	0.89
Non-Cytoplasmic	546	549	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESLALRSIS LSASYLSLHR SSSKSFALLP PSISVHTSPT LRSLSISSPR FTLRATASSL  60
   61 PEEQNKPQPP PPSPPQPQGA KLIPLAISVS IGLIVRFLIP RPEQVTSQGW QLLSIFLFTI 120
  121 SGLVLGPLPV GAWAFIGLTA SIVTKTLPFS TAFAAFTNEL IWLIAISFFF ARGFIKTGLG 180
  181 DRIATYFVKW LGKSTLGLSY GLAFCETLMG LIMPSTMARA GGVFLPVIKS LAISAGSYPG 240
  241 DPSSRKLGSF LIQTQLQCSG ASGAILLTSA AQNLLCLKLA REVGVVISNP WITWFKVASV 300
  301 PAFVSLLCTP LIIYKLYPPE LKHTPEAPAA AAKKLERLGP ITKNEWIMLG AMAFTVSLWV 360
  361 FGEAIGIASV VSAMIGLSTL LLLGVINWDD CLSDKSAWDS LTWFAVLIGM AGQLTNLGVV 420
  421 AWMSDCVAKL LQSLSLTWPA SFIILQACYL LIHYLFASQT GHAGALYPPF LAMQIAAGVP 480
  481 GVLAALCLAF NNNLSGALAH YSGGPAALYY GAGYVDLRDM FRVGFVMALV QAIIWGGVGS 540
  541 FWWKFLGLY