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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RSH3C_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVATTIALY ASPASTVCST AHQINAHISC DLDLNSRSSS ASSSTSSPTI GGLSLLFSGA  60
   61 SVKSSSSSSS SHPSVGEELA SIRHDRSEDR TLSGSFCYSP SKFIGSSYLK RDHQSPVSVL 120
  121 HGPISSGNSP PMRISRDRNL DGGSALRVGS SRLFNGFVRK AIGSCVDYDT DSVLVDEQLP 180
  181 FTMDDGFEGE RRQPYARDLL RRAQLKHKIF EDESVIKAFY EAEKAHRGQM RATGDPYLQH 240
  241 CVETAMLLAD IGANSTVVVA GILHDTLDDS FMSYDYILRT FGSGVADLVE GVSKLSQLSK 300
  301 LARENNTACK TVEADRLHTM FLAMADARAV LIKLADRLHN MMTLYALPPV KRQRFAKETL 360
  361 EIFAPLANRL GISSWKVKLE NLCFKHLHPD QHHEMSDMLE DSFDEAMITS AIEKLEQALK 420
  421 KEGISYHVVS GRHKSLYSIY CKMLKKKLTM DEIHDIHGLR LIVDNEKDCY KALGVVHKLW 480
  481 SEVPGKLKDY ISHPKFNGYQ SLHTVVMGDG TIPLEVQIRT KEMHLQAEFG FAAHWRYKEG 540
  541 DCKHSSFVLQ MVEWARWVVT WHFETMSKDG SSICSSEPLC SFPSHAEDCP FSYKPSGNQE 600
  601 GPVYVIVIEN EKMTVQEFPE NSTVSDLLRR AGPGSSRWSM YSIPAKEELR PRLNQTPVSD 660
  661 LKCKLKMGDV VELTPAIPDK SLTEYREEIQ RMYDRGLAFS RPHRAATGTM VGWGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle