YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8885559
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL  60
   61 IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS KKILKMPSTP TTPTTTTPIT 120
  121 ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI 180
  181 NNNRRSVIRR RRSGRRPSFN PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR 240
  241 PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS 300
  301 EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE 360
  361 EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM DGGGIGNSQD GPRRISWVRS 420
  421 HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE 480
  481 VESRVLDRSN SVMRRYFRRN RSNRDSSSSV LH

Type	Start	End	Confidence
Cytoplasmic	1	71	0.60
Transmembrane Helix	72	89	0.61
Non-Cytoplasmic	90	512	0.98