YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PXG1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKTEMMER DAMATVAPYA PVTYHRRARV DLDDRLPKPY MPRALQAPDR EHPYGTPGHK  60
   61 NYGLSVLQQH VSFFDIDDNG IIYPWETYSG LRMLGFNIIG SLIIAAVINL TLSYATLPGW 120
  121 LPSPFFPIYI HNIHKSKHGS DSKTYDNEGR FMPVNLELIF SKYAKTLPDK LSLGELWEMT 180
  181 EGNRDAWDIF GWIAGKIEWG LLYLLARDEE GFLSKEAIRR CFDGSLFEYC AKIYAGISED 240
  241 KTAYY

Type	Start	End	Confidence
Cytoplasmic	1	93	0.94
Transmembrane Helix	94	117	0.87
Non-Cytoplasmic	118	245	0.84