YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGP27_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSILLTLI TFIFLSSLSL SSPTTNTIPS SQTISPSEEK ISPEIAPLLP SPAVSSTQTI  60
   61 PSSSTLPEPE NDDVSADPDP AFAPSASPPA SSLASLSSQA PGVFIYFVFA AVYCFSLRLL 120
  121 AVSAI

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	101	0.96
Transmembrane Helix	102	122	0.82
Cytoplasmic	123	125	0.85