YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTNLC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG  60
   61 GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL FGHISILALA VLFLWSSAST 120
  121 FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS 180
  181 KVGSSCNFLT LIYIATVLLF TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM 240
  241 SKIPKGAFAF IKKKD

Type	Start	End	Confidence
Cytoplasmic	1	74	0.95
Transmembrane Helix	75	93	0.83
Non-Cytoplasmic	94	98	0.74
Transmembrane Helix	99	119	0.90
Cytoplasmic	120	172	0.88
Transmembrane Helix	173	197	0.67
Non-Cytoplasmic	198	255	0.72