YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7484940, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFLVTVAEF SLWLLLIVLF GFLSVVVFEA WRRRHSNVSV ETVTTLDDPK SIKPIPCPHI  60
   61 TDPAEKYLSL IVPAYNEELR LPAALEETMD YLQDRASRDK SFSFEVVIVD DGSVDGTKRV 120
  121 AFDFIRKYTI DNIRVIPLGK NQGKGEAIRK GMLHSRGQLL LMLDADGATK VTDLEKLENQ 180
  181 INAVAREEYS IRNPASKDMD FKIGDVQVSA FGSRAHLEEK ALATRKWYRN FLMKGFHLVV 240
  241 LLAAGPGIRD TQCGFKMFTR AAARRLFTNV HLKRWCFDVE LVYLCKRFNI PMVEISVKWS 300
  301 EIPGSKVSML SIPNMLWELA LMSVGYRTGM WKIHQV

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.50
Transmembrane Helix	10	31	0.84
Cytoplasmic	32	229	0.59
Transmembrane Helix	230	248	0.35
Non-Cytoplasmic	249	336	0.68