YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCX2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.92
Transmembrane Helix	10	30	0.94
Non-Cytoplasmic	31	87	0.95
Transmembrane Helix	88	107	0.91
Cytoplasmic	108	123	0.84
Transmembrane Helix	124	144	0.89
Non-Cytoplasmic	145	164	0.83
Transmembrane Helix	165	187	0.90
Cytoplasmic	188	197	0.92
Transmembrane Helix	198	218	0.95
Non-Cytoplasmic	219	224	0.76
Transmembrane Helix	225	245	0.93
Cytoplasmic	246	305	0.96
Transmembrane Helix	306	326	0.83
Non-Cytoplasmic	327	333	0.76
Transmembrane Helix	334	353	0.93
Cytoplasmic	354	361	0.87
Transmembrane Helix	362	383	0.93
Non-Cytoplasmic	384	392	0.82
Transmembrane Helix	393	412	0.94
Cytoplasmic	413	420	0.74
Transmembrane Helix	421	442	0.90
Non-Cytoplasmic	443	471	0.81
Transmembrane Helix	472	494	0.82
Cytoplasmic	495	505	0.76
Transmembrane Helix	506	525	0.92
Non-Cytoplasmic	526	530	0.76
Transmembrane Helix	531	552	0.89
Cytoplasmic	553	559	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSFSSNRF GYLTVTFLLV ISCLLLGFFT NPVDSSALRP KSEHDCSALK HFHDYKSKCA  60
   61 YLKSIDPCAS QGFFDYLSFL YCNFEGFPIL GQFLLFLWLL LLFYLLGHTA SEYFCSSLES 120
  121 LSKLLNLSPT VAGVTLLSLG NGAPDLFASL VSFMGESKGT YDVGLNTVVG GSGFVTCVVV 180
  181 GIISISLHKR RVRIERAAFI RDICFFCAAI GSLALILVYG KINFWGALGF CSLYAVYVAF 240
  241 VVLSWRFGGD QGAESDLESI HKRGSLSEPI LQRDGLEEIE DGVVNGEHQI VDDDDDHQRY 300
  301 YYWKRLVIWA ITLPLNLPRI LTIPVVSEDK WSKPLAVASV TFAPVLLSFL WNWKRKPTSF 360
  361 EAGVVYLIGC LIGIALGFIA GATTKKLTPP KKWLLPWLAG GFVMSMTWSY ISAQELVALL 420
  421 TSLGYIFGVS PSILGLTVLA WGNSIGDLIT NLTMALHDGN EGAQVAVSGC YAGPIFNTLF 480
  481 ALGISLVGCA WEAYPLSIVI KTDPRLLESL GFLVAGLVWS FLVLFSNRMR LGGVMGIGLL 540
  541 VIYLASLSLR IMQTVGDAH