YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25402690, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKALESNSK SRKETILIKY AIFSRLLVLF LTILWRSLLQ PYDTSAALNP PCLYHKEDSF  60
   61 PFLVANAASR SLENSVVWDS VYFLRITECG YEYEQTYAFL PLLPFFISLL SRTVFAPLVP 120
  121 LIGLRAVMVL SGFTVSNLAF IFAAIYLFRV SVIILKDTEA SFRASIIFCF NPASIFYSSI 180
  181 YSESLYALFS IGGVYHLLSG TSNVGVLWFA LSGCARSNGI LNAGYICFQT MHRAYEALYQ 240
  241 KRRAYLAMQV FIAGFLRCIC ICLPFVAFQA YGYYNICHGH TRDEVRPWCK GRIPLLYNFI 300
  301 QKILVSDRGV GFLKYFQFKQ LPNFLLASPI LSLAVCSIMS YMKSRPELFI SLGFQATEKE 360
  361 KRSAARLYSL KDAVEPSVKT STNEGNHDIR QRKPSSKKDV TGTKVAPEKS GYLSADVFPF 420
  421 IVHLSFMVTT AFFIMHVQVA TRFLSASPPL YWFASSLIGS PKHSKWGYLI WSYCAAYILL 480
  481 GTLLFSNFYP FT

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	39	0.90
Non-Cytoplasmic	40	125	0.76
Transmembrane Helix	126	148	0.88
Cytoplasmic	149	159	0.59
Transmembrane Helix	160	181	0.66
Non-Cytoplasmic	182	191	0.56
Transmembrane Helix	192	226	0.61
Cytoplasmic	227	245	0.89
Transmembrane Helix	246	268	0.90
Non-Cytoplasmic	269	320	0.94
Transmembrane Helix	321	342	0.89
Cytoplasmic	343	416	0.94
Transmembrane Helix	417	440	0.78
Non-Cytoplasmic	441	466	0.55
Transmembrane Helix	467	489	0.90
Cytoplasmic	490	492	0.46