YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3540192, gi\|7...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKIKLFLWK AAAGALPVGA QLVRRHISST WDCARCGAPE TSTHMLFHCD FAAQVWNLAP  60
   61 LQLGHIPIGT PILEALNLLK KTIVLPPVGI HTATLFPWIC WHIWKARNQL IFQNSHFSVI 120
  121 ETVTKAVQDA LAWQSAQLAL PKVRVATPRP NSTTTLTHDF LCYVDAAWQQ QSSLAGSGWV 180
  181 FQATSHSEKE ITTFSAGCRR FPSPLAAEAW AIKSAMLHAL QLERSDLLVL SDSKSIVDAL 240
  241 NSNVSLNEIF GLLVEIRSIR NRFRSISFQF IPRLVNSIAD AAAKLSLCIS GNIGLDPDLS 300
  301 IYESVFRLAL LTRLTIWLTL FSLEDIHCSI ESYLGRFQNL LRAGNMRYIQ IMLILTRAFL 360
  361 KPLASDRNLK ESNI

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	374	0.97