YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15235962, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKTLIFII IIIVISTPLP SLSFQIPSNR TPTTSTLIFS QDKALARNTI QQQFLRPHNI  60
   61 LRAKLRLPPL KWSNSLALYA SRWARTRRGD CKLIHSGGPY GENLFWGSGK GWTPRDAVAA 120
  121 WASEMKYYDR RTSHCKANGD CLHYTQLVWK KSSRIGCAIS FCKTGDTFII CNYDPPGNIV 180
  181 GQPPF

Type	Start	End	Confidence
Cytoplasmic	1	5	0.49
Transmembrane Helix	6	24	0.53
Non-Cytoplasmic	25	185	0.96