YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAAT7_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.77
Transmembrane Helix	62	83	0.89
Non-Cytoplasmic	84	93	0.56
Transmembrane Helix	94	116	0.84
Cytoplasmic	117	125	0.56
Transmembrane Helix	126	151	0.63
Non-Cytoplasmic	152	188	0.65
Transmembrane Helix	189	207	0.93
Cytoplasmic	208	215	0.81
Transmembrane Helix	216	235	0.94
Non-Cytoplasmic	236	253	0.91
Transmembrane Helix	254	274	0.94
Cytoplasmic	275	294	0.87
Transmembrane Helix	295	316	0.90
Non-Cytoplasmic	317	346	0.89
Transmembrane Helix	347	370	0.88
Cytoplasmic	371	390	0.90
Transmembrane Helix	391	411	0.91
Non-Cytoplasmic	412	416	0.76
Transmembrane Helix	417	437	0.90
Cytoplasmic	438	448	0.79
Transmembrane Helix	449	472	0.88
Non-Cytoplasmic	473	478	0.87
Transmembrane Helix	479	500	0.93
Cytoplasmic	501	507	0.89
Transmembrane Helix	508	529	0.91
Non-Cytoplasmic	530	536	0.73
Transmembrane Helix	537	557	0.88
Cytoplasmic	558	584	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAQYRNHDG DTSFSSLRVY LNSLSDTPSR FSRRAVSVST SYDEMSRVRA VSGEQMRRTL  60
   61 RWYDLIGLGI GGMIGAGVFV TTGRASRLYA GPSIVVSYAI AGLCALLSAF CYTEFAVHLP 120
  121 VAGGAFSYIR ITFGEFPAFI TGANLIMDYV LSNAAVSRGF TAYLGSAFGI STSEWRFIVS 180
  181 GLPNGFNEID PIAVIVVLAV TFVICYSTRE SSKVNMVLTA LHIAFIVFVI VMGFSKGDVK 240
  241 NLTRPDNPEN PSGFFPFGVS GVFNGAAMVY LSYIGYDAVS TMAEEVKDPV KDIPMGISGS 300
  301 VAIVIVLYCL MAISMSMLLP YDLIDAEAPY SAAFSKSEGW EWVTRVVGIG ASFGILTSLI 360
  361 VAMLGQARYM CVIGRSRVVP IWFAKVHPKT STPVNASAFL GIFTAVLALF TDLNVLLNLV 420
  421 SIGTLFVFYM VANAVIFRRY VTVGYTEPWP TLSFLCLFSI TSILFTLVWQ LAPSGPPKWF 480
  481 ILGASTVTAI AIVQIFHCVV PQARIPEFWG VPLMPWTPCV SIFLNIFLLG SLDAPSYIRF 540
  541 GFFSGLVVLV YVFYSVHASY DAEGDGSLDF KDVESLERIN RVLS