YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXSB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.52
Transmembrane Helix	36	70	0.72
Non-Cytoplasmic	71	83	0.45
Transmembrane Helix	84	102	0.36
Cytoplasmic	103	148	0.57
Transmembrane Helix	149	170	0.80
Non-Cytoplasmic	171	201	0.90
Transmembrane Helix	202	220	0.93
Cytoplasmic	221	234	0.90
Transmembrane Helix	235	255	0.94
Non-Cytoplasmic	256	263	0.78
Transmembrane Helix	264	285	0.85
Cytoplasmic	286	296	0.81
Transmembrane Helix	297	319	0.88
Non-Cytoplasmic	320	360	0.67
Transmembrane Helix	361	388	0.72
Cytoplasmic	389	403	0.52
Transmembrane Helix	404	426	0.71
Non-Cytoplasmic	427	435	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEELKNLIK VSVSVIISIS YCYYVPTRIK PGIFRFLSVL PICALFRVLP LFFASVHLSG  60
   61 YTALFISWLA NFKLILFSFN QGPLFPLPSN LTRFICFACF PIKLQQNPKR RDYFFQWEYP 120
  121 IEVLFSNQFV TKVVILSVVL HMYNHIQHIY PIVLFVLYPL HLYLVLEILL KLFNAFFSIA 180
  181 LDCELEPQLN EPYLAYSLRD FWGHWWTLML PTILLPDVYA RMRRITEGKM NSENALYLGV 240
  241 FVTFLVSGAL HEFLFFYITR ERPTGEVTLF FVLHGVCIVA YDARLKKKIA RWIGFEFCPC 300
  301 LILQVMVMGF VVVTAGWLFF PPLVRTGKIQ RFANEALLFI GFVRNLFNES LFFMRKFFNE 360
  361 ALFFTGFVMR KLFNGALFFI GFVKLKLFNE SSLFFIMRKL FNEAMFFIGF VIRKLFNEAM 420
  421 FFIGFVKLKL FTFGW