YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UP3_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICARIRPLI SSPLAFTIST TKHSRINLRL LPRRSFSVMS SSTPQSQIIE HIVLFKTKDD  60
   61 ADSTKITSMI NNLNALAYLD QVLHISTSPL HRISSATAFT HVLHSRYESK EDLASYAAHP 120
  121 DHVRVVKESV LPICDDIMAV DWIADRIPGT VAPLPGSVAK LTLLKLKEDV ADEAKSEITG 180
  181 VIKGLSEKFP GIDQITVGEN FSPARAKGFS IASIAYFKDL SEMEAVDAQK ELVNSQKDKV 240
  241 RDYVDSTIVV EFVVPSSSQS SSL

Type	Start	End	Confidence
Signal Peptide	1	21	0.51
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	263	0.99