YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IPT6_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLMTLLSP PLSHSSLLPT VTTKFGSPRL VTTCMGHAGR KNIKDKVVLI TGTTGTGKSR  60
   61 LSVDLATRFF PAEIINSDKM QIYKGFEIVT NLIPLHEQGG VPHHLLGQFH PQDGELTPAE 120
  121 FRSLATLSIS KLISSKKLPI VVGGSNSFNH ALLAERFDPD IDPFSPGSSL STICSDLRYK 180
  181 CCILWVDVLE PVLFQHLCNR VDQMIESGLV EQLAELYDPV VDSGRRLGVR KTIGVEEFDR 240
  241 YFRVYPKEMD KGIWDLARKA AYEETVKGMK ERTCRLVKKQ KEKIMKLIRG GWEIKRLDAT 300
  301 AAIMAELNQS TAKGEGKNGR EIWEKHIVDE SVEIVKKFLL EV

Type	Start	End	Confidence
Signal Peptide	1	15	0.74
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	342	0.99