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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: LRKS4_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTFAVILL LLIFLTHLVS SLIQDFSFIG FKKASPNLTL NGVAEIAPTG AIRLTTETQR  60
   61 VIGHAFYSLP IRFKPIGVNR ALSFSTSFAI AMVPEFVTLG GHGLAFAITP TPDLRGSLPS 120
  121 QYLGLLNSSR VNFSSHFFAV EFDTVRDLEF EDINDNHVGI DINSMESSIS TPAGYFLANS 180
  181 TKKELFLDGG RVIQAWIDYD SNKKRLDVKL SPFSEKPKLS LLSYDVDLSS VLGDEMYVGF 240
  241 SASTGLLASS HYILGWNFNM SGEAFSLSLP SLPRIPSSIK KRKKKRQSLI LGVSLLCSLL 300
  301 IFAVLVAASL FVVRKVKDED RVEEWELDFG PHRFSYRELK KATNGFGDKE LLGSGGFGKV 360
  361 YKGKLPGSDE FVAVKRISHE SRQGVREFMS EVSSIGHLRH RNLVQLLGWC RRRDDLLLVY 420
  421 DFMPNGSLDM YLFDENPEVI LTWKQRFKII KGVASGLLYL HEGWEQTVIH RDIKAANVLL 480
  481 DSEMNGRVGD FGLAKLYEHG SDPGATRVVG TFGYLAPELT KSGKLTTSTD VYAFGAVLLE 540
  541 VACGRRPIET SALPEELVMV DWVWSRWQSG DIRDVVDRRL NGEFDEEEVV MVIKLGLLCS 600
  601 NNSPEVRPTM RQVVMYLEKQ FPSPEVVPAP DFLDANDSMC LDERSGSAGE FEDFVDSARF 660
  661 YSGPNETTTS SIFSFSGKTR TDPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle