YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX40_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	54	0.98
Transmembrane Helix	55	75	0.91
Non-Cytoplasmic	76	100	0.82
Transmembrane Helix	101	119	0.90
Cytoplasmic	120	132	0.80
Transmembrane Helix	133	155	0.84
Non-Cytoplasmic	156	166	0.71
Transmembrane Helix	167	188	0.89
Cytoplasmic	189	200	0.84
Transmembrane Helix	201	224	0.86
Non-Cytoplasmic	225	230	0.83
Transmembrane Helix	231	254	0.91
Cytoplasmic	255	274	0.88
Transmembrane Helix	275	295	0.91
Non-Cytoplasmic	296	314	0.82
Transmembrane Helix	315	336	0.89
Cytoplasmic	337	352	0.87
Transmembrane Helix	353	376	0.91
Non-Cytoplasmic	377	400	0.91
Transmembrane Helix	401	424	0.82
Cytoplasmic	425	432	0.72
Transmembrane Helix	433	451	0.94
Non-Cytoplasmic	452	457	0.73
Transmembrane Helix	458	478	0.91
Cytoplasmic	479	506	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA  60
   61 APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ VFAYGLMLGM GSAVETLCGQ 120
  121 AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI 180
  181 PQIFAYAANF PIQKFLQSQS IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL 240
  241 SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL 300
  301 LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN 360
  361 IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP LLAVTLVLNG IQPVLSGVAV 420
  421 GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT 480
  481 DWTKEVEEAS KRLDKWSNKK QEVVPE