YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25336303, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECSSVSVLG ILLVFPLLHN LVTISGQNLP AVGLFTFGDS NFDAGNKKFL TSAPLPQNFW  60
   61 PYGKSRDDPK GKFSDGKIVP DFIAKFMGIP HDLPPALKPG TDVSRGASFA VGSASILGSP 120
  121 KDSLALNQQV RKFNQMISNW KVDYIQKSVF MISIGMEDYY NFTKNNPNAE VSAQQAFVTS 180
  181 VTNRFKSDIN LLYSSGASKF VVHLLAPLGC LPIARQEFKT GNNCYEKLND LAKQHNAKIG 240
  241 PILNEMAETK PDFQFTVFDF YNVILRRTQR NMNYRELQFA IQRFSVTNIS CCGVGTHYAY 300
  301 GCGLPNVHSK LCEYQRSYLY FDARHNTEKA QEAFAHLIFG ADPNVIQPMN VRELMVYPVN 360
  361 EPMREFWEDP MDEKLSLVQY

Type	Start	End	Confidence
Signal Peptide	1	26	0.87
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	380	0.99